[OPEN-ENG] Microbiome Analysis Guide Book
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  • Microbiome analysis user guide book
  • I. INTRODUCTION
    • 1. Prologue
    • 2. Report & Raw data Download
    • 3. Analysis Report Template
  • II. PROJECT INFORMATION
    • 1. Project Information
  • III. NGS SEQUENCING
    • 1. NGS Statistics
  • IV. TAXONOMY ANALYSIS
    • 1. Taxonomy Summary
    • 2. Krona Chart
  • V. DIVERSITY ANALYSIS
    • 1. α-Diversity
      • Additional Information
    • 2. β-Diversity
    • 3. LEfSe
    • 4. Heatmap
  • Ⅵ. FUNCTIONAL ANALYSIS
    • 1. Functional Profile
      • KEGG page
  • Ⅶ. ADDITIONAL ANALYSIS
    • 1. Phylogenetic tree with Statistics
  • + REFERENCE
    • 1. Reference
    • 2. Database Version
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  1. + REFERENCE

1. Reference

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Last updated 7 months ago

Reference

Provides all reference papers such as Database, Method, Statistics, etc. used in microbiome analysis. You can check the relevant reference details in the reference page.

Databases

- NCBI

- Greengene

- SILVA

- Patric

- eHOMD

- Zymo

Microbiome Analysis

- 16S rRNA Analysis

- Pre-processing & Feature clustering

- Database

Taxonomy Analysis

- Taxonomy assignment

- Krona Chart

- Phylogenetic tree

Diversity Analysis

- Alpha Diversity

- Beta Diversity

- LefSe Analysis

- Heatmap

Functional Analysis

- Functional Prediction

Additional Analysis

- Phylogenetic tree with Statistics

- Statistics